I don't think corrosion is the issue. I mean, it definitely isn't with a stainless pipe. I think the issue is the potential for condensation to build up to a degree where it impedes flow through the pipe.
Anything that impedes airflow in or out of the boiler could lead to a rich burn, which could lead to carbon buildup. And it's true that car exhausts don't follow a nice even pitch downwards, but I also suspect that a car engine is pushing out exhaust with a lot greater pressure than this boiler, with a much larger pipe, and possibly more heat to evaporate out any condensation buildup.
At the end of the day, I would look at what the manual for the boiler suggests for exhaust routing. If it doesn't have any of the requirements of the Webasto like making sure it has a downward pitch, then whatever. But if it does, I wouldn't disregard them. Whoever engineered the system got the installation manual authors to put it in the manual for a reason.
That said, you might get away with it, who knows. At least your exhaust isn't sloping up at any point.