How do you plan on filling it up? Have you taken into consideration that while it is running there will be a lot of vibration and noise transmitted to the interior?
Are you mostly doing this to prevent theft?
A water proof container is not likely to have enough air movement. You need vents and openings for running a generator, up on a roof while going down the road the wind will push water into any vent openings.
develop the practice of visualization...such as the generator is running, what will that be like if I am inside the van.
I am driving down the road in a strong rain with a lot of wind at 70mph, what is going to happen to my generator enclosure
I need to add gas to the generator, how will I manage to do that?
What if I spill some gas while filling it?